(6.2) Note that the proof of Proposition 5.4 gives an explicit description of the set $Z$ and the integral affine structure on $\mathrm{Sk}(X)\setminus Z$ induced by the non-archimedean SYZ fibration: after our finite sequence of blow-ups at zero-dimensional strata, the gluing data along codimension one faces of the skeleton are determined by the intersection numbers $(C\cdot E)$. This is quite similar to the constructions for log Calabi-Yau surfaces in [GHK15, Yu16a] and for toric degenerations in the Gross-Siebert program [GS11b].