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4.1. The skeleton is a pseudo-manifold [04VX]

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4.1. The skeleton is a pseudo-manifold

(4.1.1) The case where XX is a family of Calabi-Yau varieties over CC is of particular interest; the connections with homological mirror symmetry were the main motivation for Kontsevich and Soibelman to define the skeleton in [KS06]. If ω\omega is a volume form on XKX_{K} (i.e., a nowhere vanishing differential form of maximal degree) then Sk⁡(XK)=Sk⁡(XK,ω)\mathrm{Sk}(X_{K})=\mathrm{Sk}(X_{K},\omega) by [MN13, 4.6.4]. We will now prove that the underlying topological space of the essential skeleton Sk⁡(XK)\mathrm{Sk}(X_{K}) is a pseudo-manifold with boundary; this result is implicitly contained in [KK10, Ko11].

(4.1.2) A topological space TT is called an nn-dimensional pseudo-manifold with boundary if it admits a triangulation 𝒯\mathscr{T} satisfying the following conditions:

  1. (1)

    (dimensional homogeneity) T=|𝒯|T=|\mathscr{T}| is the union of all nn-simplices.

  2. (2)

    (non-branching) Every (n−1)(n-1)-simplex is a face of precisely one or two nn-simplices.

  3. (3)

    (strong connectedness) For every pair of nn-simplices σ\sigma and σ′\sigma^{\prime} in 𝒯\mathscr{T}, there is a sequence of nn-simplices

    σ=σ0,σ1,…,σℓ=σ′\sigma=\sigma_{0},\sigma_{1},\ldots,\sigma_{\ell}=\sigma^{\prime}

    such that the intersection σi∩σi+1\sigma_{i}\cap\sigma_{i+1} is an (n−1)(n-1)-simplex for all ii.

We say that TT is a closed pseudo-manifold if we can replace condition (2) by the property that every (n−1)(n-1)-simplex is a face of precisely two nn-simplices. A typical example of a 2-dimensional closed pseudo-manifold which is not a manifold is the pinched torus.

(4.1.3) For the reader’s convenience, we include some basic facts about adjunction for d​l​tdlt-pairs. We refer to Chapter 4 of [Ko13] for more background. Let (Y,Δ)(Y,\Delta) be a d​l​tdlt-pair over kk, and let DD be a log canonical center of (Y,Δ)(Y,\Delta). Then DD is normal, by [Ko13, 4.16]. There is a well defined ℚ\mathbb{Q}-divisor ΔD\Delta_{D} on DD, called the different of Δ\Delta on DD [Ko13, 4.18], which is induced by the Poincaré map and satisfies the equation

(KY+Δ)|D=KD+ΔD.(K_{Y}+\Delta)|_{D}=K_{D}+\Delta_{D}.

In the sequel, whenever we write such an equation it will be understood that ΔD\Delta_{D} is the different of Δ\Delta on DD. The pair (D,ΔD)(D,\Delta_{D}) is again a d​l​tdlt-pair, by [Ko13, 4.19]. Write ⌊Δ⌋=∑i∈IDi\lfloor\Delta\rfloor=\sum_{i\in I}D_{i}. If JJ is a subset of II and DD is a component of ⋂j∈JΔj\bigcap_{j\in J}{\Delta}_{j}, it is not hard to see that for every non-empty subset J′J^{\prime} of I∖JI\setminus J, every irreducible component of the intersection

D∩⋂j∈J′ΔjD\cap\bigcap_{j\in J^{\prime}}\Delta_{j}

is a log canonical center of (D,ΔD)(D,\Delta_{D}) (see [Ko13, 4.19]). Conversely, by repeatedly using inversion of adjunction [Ko13, 4.9], one sees that any log canonical center of (D,ΔD)(D,\Delta_{D}) is a log canonical center of (Y,Δ)(Y,\Delta), and thus an irreducible component of an intersection D∩⋂j∈J′ΔjD\cap\bigcap_{j\in J^{\prime}}\Delta_{j} for some non-empty subset J′J^{\prime} of I∖JI\setminus J.

Theorem 4.1.4.

Assume that KXK_{X} is ℚ\mathbb{Q}-linearly equivalent to 00 over CC. Then the underlying topological space of Sk⁡(XK)\mathrm{Sk}(X_{K}) is a a pseudo-manifold with boundary.

Proof.

As we mentioned above, this result is essentially contained in [KK10, Ko11]. Using the terminology there, properties (1)-(3) of a pseudo-manifold all follow from the fact that two minimal log canonical centers of a log crepant structure are ℙ1\mathbb{P}^{1}-linked in the sense of Definition 9 in [Ko11]. We will now explain this in more detail. We denote by nn the relative dimension of XX over CC.

By Theorem 2.2.6(1), there exists a a good minimal d​l​tdlt-model 𝒳\mathscr{X} of XX over 𝒞\mathscr{C}. By Theorem 3.3.4, we have Sk⁡(XK)=Sk⁡(𝒳)\mathrm{Sk}(X_{K})=\mathrm{Sk}(\mathscr{X}). As a triangulation on Sk⁡(𝒳)\mathrm{Sk}(\mathscr{X}), we take the first barycentric subdivision of the simplicial structure on Sk⁡(𝒳)\mathrm{Sk}(\mathscr{X}). This barycentric subdivision is necessary to guarantee that the intersection of two faces is a codimension one face of both, rather than a union of faces (think of a type I2I_{2} degeneration of elliptic curves, whose skeleton consists of two vertices joined by two edges).

We choose an integer m>0m>0 such that m​KX∼0mK_{X}\sim 0. Since the divisor m​K𝒳+m​(𝒳s)redmK_{\mathscr{X}}+m(\mathscr{X}_{s})_{\mathrm{red}} is semi-ample over 𝒞\mathscr{C} and trivial over CC, we see that m​K𝒳+m​(𝒳s)redmK_{\mathscr{X}}+m(\mathscr{X}_{s})_{\mathrm{red}} must be a multiple of 𝒳s\mathscr{X}_{s} and thus trivial over 𝒞\mathscr{C}. Thus we can apply Theorem 10 in [Ko11] to the d​l​tdlt-pair (𝒳,(𝒳s)red)(\mathscr{X},(\mathscr{X}_{s})_{\mathrm{red}}) over 𝒞\mathscr{C}. It states that every two minimal log canonical centers DD and D∗D^{*} of (𝒳,(𝒳s)red)(\mathscr{X},(\mathscr{X}_{s})_{\mathrm{red}}) are ℙ1\mathbb{P}^{1}-linked. This means, in particular, that they have the same dimension, say n−dn-d, and that there exist a sequence of (n−d+1)(n-d+1)-dimensional log canonical centers E1,E2,…,EℓE_{1},E_{2},\ldots,E_{\ell} and a sequence of (n−d)(n-d)-dimensional log canonical centers D=D0,D1,…,Dℓ=D∗D=D_{0},D_{1},\ldots,D_{\ell}=D^{*} such that Di−1,Di⊂EiD_{i-1},D_{i}\subset E_{i} for 1≤i≤ℓ1\leq i\leq\ell. In this way, we obtain properties (1) and (3) of a pseudo-manifold with boundary.

If we have two minimal log canonical centers D1,D2D_{1},\,D_{2} of (𝒳,(𝒳s)red)(\mathscr{X},(\mathscr{X}_{s})_{\mathrm{red}}), contained in an (n−d+1)(n-d+1)-dimensional log canonical center EE, and if we write

(K𝒳+(𝒳s)red)|E=KE+D1+D2+Δ(K_{\mathscr{X}}+(\mathscr{X}_{s})_{\mathrm{red}})|_{E}=K_{E}+D_{1}+D_{2}+\Delta

for some Δ≥0\Delta\geq 0, then (E,D1+D2+Δ)(E,D_{1}+D_{2}+\Delta) is again a d​l​tdlt-pair [Ko13, 4.19]. Moreover, D1D_{1} cannot intersect D2D_{2} or ⌊Δ⌋\lfloor\Delta\rfloor because the intersection would be a union of log canonical centers of (𝒳,(𝒳s)red)(\mathscr{X},(\mathscr{X}_{s})_{\mathrm{red}}), which contradicts the minimality of D1D_{1}. Thus we are in the situation of the second part of the proof of Theorem 10 in [Ko11]. That proof shows that D1D_{1} and D2D_{2} are the only log canonical centers of (E,D1+D2+Δ)(E,D_{1}+D_{2}+\Delta). Property (2) follows. ∎

(4.1.5) We can say more in the case where Sk⁡(𝒳)\mathrm{Sk}(\mathscr{X}) has maximal dimension, that is, dimension equal to n=dim(XK)n=\dim(X_{K}). First, we need a lemma.

Lemma 4.1.6.

Let (Z,Δ=∑i=1jΔi)(Z,\Delta=\sum^{j}_{i=1}\Delta_{i}) be a reduced d​l​tdlt-pair over kk such that KZ+ΔK_{Z}+\Delta is Cartier. Let DD be a log canonical center and let Δ1,…,Δℓ\Delta_{1},\ldots,\Delta_{\ell} be the irreducible components of Δ\Delta that contain DD. Let UU be the maximal open subset of ZZ where ZZ is smooth and Δ\Delta is a divisor with strict normal crossings. If we write (KZ+Δ)|D=KD+ΔD(K_{Z}+\Delta)|_{D}=K_{D}+\Delta_{D}, then ΔD\Delta_{D} is equal to the closure of the restriction of ∑i=ℓ+1jΔi|U\sum^{j}_{i=\ell+1}\Delta_{i}|_{U} to U∩DU\cap D.

Proof.

We first notice that in the above statement, UU can be replaced by any smaller open set that meets all the log canonical centers: the closure of the restriction of ∑i=ℓ+1jΔi|U\sum^{j}_{i=\ell+1}\Delta_{i}|_{U} to U∩DU\cap D will yield the same divisor on DD.

Then by induction, we only need to treat the case where DD is a component of Δ\Delta, say Δ1\Delta_{1}. If we take a log resolution f:Y→(Z,Δ)f:Y\to(Z,\Delta) and let D′=Δ1′D^{\prime}=\Delta^{\prime}_{1} be the birational transform of DD, then ΔD\Delta_{D} can be computed as follows: if we write f∗​(KZ+Δ)|D′=KD′+ΔD′f^{*}(K_{Z}+\Delta)|_{D^{\prime}}=K_{D^{\prime}}+\Delta_{D^{\prime}} then ΔD=(f|D′)∗​(ΔD′)\Delta_{D}=(f|_{D^{\prime}})_{*}(\Delta_{D^{\prime}}). In particular, as KZ+ΔK_{Z}+\Delta is Cartier, we know that ΔD\Delta_{D} is a integral divisor. Since it is effective, and all the components of ΔD\Delta_{D} are log canonical centers of (X,Δ)(X,\Delta), we see that ΔD\Delta_{D} must be equal to the closure of the restriction of ∑i=2jΔi|U\sum^{j}_{i=2}\Delta_{i}|_{U}. ∎

Theorem 4.1.7.

Assume that kk is algebraically closed, KXK_{X} is trivial over CC and XX has an s​n​csnc-model 𝒴\mathscr{Y} with reduced special fiber 𝒴s\mathscr{Y}_{s}. Assume moreover that Sk⁡(XK)\mathrm{Sk}(X_{K}) is of dimension n=dim(XK)n=\dim(X_{K}). Then Sk⁡(XK)\mathrm{Sk}(X_{K}) is an nn-dimensional closed pseudo-manifold.

Proof.

By running MMP for 𝒴\mathscr{Y} over 𝒞\mathscr{C}, we know that XX has a good minimal dlt model 𝒳\mathscr{X} with reduced special fiber (see [Fu11] or [HX13]). Then one sees as in the proof of Theorem 4.1.4 that K𝒳K_{\mathscr{X}} is trivial over 𝒞\mathscr{C}. Our assumption on the dimension of Sk⁡(XK)\mathrm{Sk}(X_{K}) implies that the minimal log canonical centers of (𝒳,𝒳s)(\mathscr{X},\mathscr{X}_{s}) are points. Let DD be a one-dimensional log canonical center, and let DiD_{i} (1≤i≤ℓ1\leq i\leq\ell) be the 0-dimensional log canonical centers contained in DD. From Lemma 4.1.6, we know that

(K𝒳+𝒳s)|D=KD+∑i=1ℓDi∼0.(K_{\mathscr{X}}+\mathscr{X}_{s})|_{D}=K_{D}+\sum^{\ell}_{i=1}D_{i}\sim 0.

Thus DD is a rational curve and ℓ=2\ell=2, which means that Sk⁡(XK)\mathrm{Sk}(X_{K}) is closed. ∎

(4.1.8) In Theorem 4.1.7, the condition that Sk⁡(X)\mathrm{Sk}(X) has maximal dimension can not be omitted; for instance, there are examples of semi-stable degenerations of K3-surfaces with trivial relative canonical sheaf where the special fiber is a chain of surfaces, so that the skeleton is homeomorphic to a closed interval. We will now give an interpretation of this condition in terms of the monodromy around s∈𝒞s\in\mathscr{C}.

Lemma 4.1.9.

Let YY be a connected smooth and proper KK-variety and let ω\omega be a non-zero mm-pluricanonical form on YY, for some m>0m>0. Let K′K^{\prime} be a finite extension of KK, set Y′=Y×KK′Y^{\prime}=Y\times_{K}K^{\prime} and denote by ω′\omega^{\prime} the pullback of ω\omega to Y′Y^{\prime}. Then the skeleton Sk⁡(Y,ω)\mathrm{Sk}(Y,\omega) is the image of Sk⁡(Y′,ω′)\mathrm{Sk}(Y^{\prime},\omega^{\prime}) under the projection morphism π:(Y′)an→Yan\pi:(Y^{\prime})^{\mathrm{an}}\to Y^{\mathrm{an}}.

Proof.

We may assume that K′K^{\prime} is Galois over KK. Let dd be the ramification index of K′K^{\prime} over KK. We will prove that

wtω′​(y)=d⋅wtω​(π⁡(y))−d+1\mathrm{wt}_{\omega^{\prime}}(y)=d\cdot\mathrm{wt}_{\omega}(\pi(y))-d+1

for every divisorial point yy on (Y′)an(Y^{\prime})^{\mathrm{an}} (see [MN13, 2.4.10] for the notion of divisorial point). This immediately implies the statement in the lemma, since Sk⁡(X,ω)\mathrm{Sk}(X,\omega) is the closure of the set of divisorial points where the weight function reaches its minimal value [MN13, 4.5.1].

We denote by R′R^{\prime} the integral closure of RR in K′K^{\prime}. Let 𝒴′\mathscr{Y}^{\prime} be a regular separated R′R^{\prime}-scheme of finite type with irreducible special fiber 𝒴k′\mathscr{Y}^{\prime}_{k}, endowed with an isomorphism of K′K^{\prime}-schemes 𝒴K′′→Y′\mathscr{Y}^{\prime}_{K^{\prime}}\to Y^{\prime}. Let yy be the unique point in red𝒴′−1​(ξ)\mathrm{red}_{\mathscr{Y}^{\prime}}^{-1}(\xi), where ξ\xi denotes the generic point of 𝒴k′\mathscr{Y}^{\prime}_{k}. Removing a closed subset of 𝒴k′\mathscr{Y}^{\prime}_{k} if necessary, we can find a regular separated RR-scheme of finite type 𝒴\mathscr{Y} and an isomorphism 𝒴K→Y\mathscr{Y}_{K}\to Y such that 𝒴′\mathscr{Y}^{\prime} is an open subscheme of the normalization of 𝒴×RR′\mathscr{Y}\times_{R}R^{\prime}. Then red𝒴​(π​(y))\mathrm{red}_{\mathscr{Y}}(\pi(y)) is a generic point of 𝒴k\mathscr{Y}_{k}.

If we use the notations from (3.2) and denote by (S′)+(S^{\prime})^{+} the log scheme associated to R′∖{0}→R′R^{\prime}\setminus\{0\}\to R^{\prime}, then the (S′)+(S^{\prime})^{+}-log scheme (𝒴′)+(\mathscr{Y}^{\prime})^{+} is isomorphic to an open log subscheme of the f​sfs base change of 𝒴+\mathscr{Y}^{+} from S+S^{+} to (S′)+(S^{\prime})^{+}. Since log differentials are compatible with f​sfs base change, we can deduce from the description of the weight function in (3.2) that

wtω′​(y)=d⋅wtω​(π⁡(y))−d+1\mathrm{wt}_{\omega^{\prime}}(y)=d\cdot\mathrm{wt}_{\omega}(\pi(y))-d+1

(the scaling factor dd is caused by the renormalization of the discrete valuation on K′K^{\prime}). ∎

Theorem 4.1.10.

Assume that k=ℂk=\mathbb{C} and denote by nn the relative dimension of XX over CC. Suppose that XX is projective over CC and that KXK_{X} is trivial over CC. Let FF be a general fiber of the morphism X→CX\to C. Then Sk⁡(XK)\mathrm{Sk}(X_{K}) has dimension nn if and only if the monodromy transformation around s∈𝒞s\in\mathscr{C} on Hn​(F​(ℂ),ℚ)H^{n}(F(\mathbb{C}),\mathbb{Q}) has a Jordan block of size n+1n+1. If this holds, and hi,0​(F)=0h^{i,0}(F)=0 for 0<i<n0<i<n, then Sk⁡(XK)\mathrm{Sk}(X_{K}) is a ℚ\mathbb{Q}-homology sphere.

Proof.

By Lemma 4.1.9 and the Semi-Stable Reduction Theorem we can assume that XX has a projective s​n​csnc-model 𝒴\mathscr{Y} over 𝒞\mathscr{C} such that 𝒴s\mathscr{Y}_{s} is reduced. For every integer i≥0i\geq 0, we denote by

𝐇i=ℍi​(𝒴s,R​ψ𝒴​(ℤ))≅Hi​(F⁡(ℂ),ℤ)\mathbf{H}^{i}=\mathbb{H}^{i}(\mathscr{Y}_{s},R\psi_{\mathscr{Y}}(\mathbb{Z}))\cong H^{i}(F(\mathbb{C}),\mathbb{Z})

the degree ii nearby cohomology of 𝒴\mathscr{Y} at ss; here R​ψ𝒴​(ℤ)R\psi_{\mathscr{Y}}(\mathbb{Z}) denotes the complex of nearby cycles with ℤ\mathbb{Z}-coefficients associated to 𝒴\mathscr{Y}. By [St76], the spaces 𝐇i\mathbf{H}^{i} carry a canonical mixed Hodge structure, whose weight filtration coincides with the monodromy filtration. In particular, there exists a Jordan block of monodromy of size n+1n+1 on 𝐇ℚn\mathbf{H}^{n}_{\mathbb{Q}} if and only if W0​𝐇ℚn≠0W_{0}\mathbf{H}^{n}_{\mathbb{Q}}\neq 0.

By [Be09, 5.1] and its proof, the ℚ\mathbb{Q}-vector space W0​𝐇ℚiW_{0}\mathbf{H}^{i}_{\mathbb{Q}} is canonically isomorphic to the degree ii singular cohomology of XKanX_{K}^{\mathrm{an}}, for every i≥0i\geq 0. Since XKanX_{K}^{\mathrm{an}} is homotopy equivalent to Sk⁡(XK)\mathrm{Sk}(X_{K}) by Corollary 3.3.6, we see that W0​𝐇ℚnW_{0}\mathbf{H}^{n}_{\mathbb{Q}} can only be different from zero if the dimension of Sk⁡(XK)\mathrm{Sk}(X_{K}) is equal to nn. We will now prove the converse implication. Suppose that Sk⁡(XK)\mathrm{Sk}(X_{K}) has dimension nn and let ω\omega be a relative volume form on XX over CC such that ω\omega extends to a global section of ω𝒴/𝒞​(log⁡𝒴s)\omega_{\mathscr{Y}/\mathscr{C}}(\log\mathscr{Y}_{s}) that generates ω𝒴/𝒞​(log⁡𝒴s)\omega_{\mathscr{Y}/\mathscr{C}}(\log\mathscr{Y}_{s}) at at least one generic point of 𝒴s\mathscr{Y}_{s} (modulo shrinking 𝒞\mathscr{C}, such ω\omega always exists). Then it follows from [MN13, 4.5.5] that Sk⁡(XK)\mathrm{Sk}(X_{K}) is the simplicial subspace of Sk⁡(𝒴)\mathrm{Sk}(\mathscr{Y}) spanned by the vertices corresponding to the irreducible components EE of 𝒴s\mathscr{Y}_{s} such that ω\omega generates ω𝒴/𝒞​(log⁡𝒴s)\omega_{\mathscr{Y}/\mathscr{C}}(\log\mathscr{Y}_{s}) at the generic point of EE. Since Sk⁡(XK)\mathrm{Sk}(X_{K}) has dimension nn, we can find such components E1,…,EnE_{1},\ldots,E_{n} that intersect in a point. Denote by DD the union of nn-fold intersection points of components of 𝒴s\mathscr{Y}_{s}. Then by reduction modulo tt, ω\omega induces an element of

H0​(𝒴s,ω𝒴/𝒞​(log⁡𝒴s)⊗𝒪𝒴s)H^{0}(\mathscr{Y}_{s},\omega_{\mathscr{Y}/\mathscr{C}}(\log\mathscr{Y}_{s})\otimes\mathcal{O}_{\mathscr{Y}_{s}})

whose image under the Poincaré residue map

ℛ:H0​(𝒴s,ω𝒴/𝒞​(log⁡𝒴s)⊗𝒪𝒴s)→H0​(𝒴s,Gr−nW​(ω𝒴/𝒞​(log⁡𝒴s)⊗𝒪𝒴s))≅H0​(D,𝒪D)\mathcal{R}:H^{0}(\mathscr{Y}_{s},\omega_{\mathscr{Y}/\mathscr{C}}(\log\mathscr{Y}_{s})\otimes\mathcal{O}_{\mathscr{Y}_{s}})\to H^{0}(\mathscr{Y}_{s},\mathrm{Gr}_{-n}^{W}(\omega_{\mathscr{Y}/\mathscr{C}}(\log\mathscr{Y}_{s})\otimes\mathcal{O}_{\mathscr{Y}_{s}}))\cong H^{0}(D,\mathcal{O}_{D})

is different from zero. However, by the degeneration of the Hodge and weight spectral sequences, the image of ℛ\mathcal{R} injects into W0​𝐇ℂnW_{0}\mathbf{H}^{n}_{\mathbb{C}}. Thus W0​𝐇ℚnW_{0}\mathbf{H}^{n}_{\mathbb{Q}} is non-trivial.

Finally, assume that Sk⁡(XK)\mathrm{Sk}(X_{K}) has dimension nn and that hi,0​(Xgen)=0h^{i,0}(X_{\mathrm{gen}})=0 for 0<i<n0<i<n. Then

GrF0​𝐇ℂi≅Hi​(𝒴s,𝒪𝒴s)=0\mathrm{Gr}_{F}^{0}\mathbf{H}^{i}_{\mathbb{C}}\cong H^{i}(\mathscr{Y}_{s},\mathcal{O}_{\mathscr{Y}_{s}})=0

for 0<i<n0<i<n and

GrF0​𝐇ℂi≅Hi​(𝒴s,𝒪𝒴s)≅ℂ\mathrm{Gr}_{F}^{0}\mathbf{H}^{i}_{\mathbb{C}}\cong H^{i}(\mathscr{Y}_{s},\mathcal{O}_{\mathscr{Y}_{s}})\cong\mathbb{C}

for i=0,ni=0,n by the degeneration of the Hodge spectral sequence for the limit mixed Hodge structure. Thus W0​𝐇ℚi=0W_{0}\mathbf{H}^{i}_{\mathbb{Q}}=0 for 0<i<n0<i<n, W0​𝐇ℚ0≅ℚW_{0}\mathbf{H}^{0}_{\mathbb{Q}}\cong\mathbb{Q} and W0​𝐇ℚnW_{0}\mathbf{H}^{n}_{\mathbb{Q}} has dimension at most one; it must have dimension one since we have already proven that it is non-zero. It follows that Sk⁡(XK)\mathrm{Sk}(X_{K}) is a ℚ\mathbb{Q}-homology sphere. ∎

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