Consider the polytope $\Delta$ of Example 3.2. The dual polytope $\nabla$ is the convex hull of the points $(-1,-1,-1,-1),(1,0,0,0),\ldots,(0,0,0,1)$. The corresponding projective toric variety $\mathbb{P}_{\nabla}$ has a crepant resolution $X_{\Sigma}\rightarrow\mathbb{P}_{\nabla}$ where $\Sigma$ is the fan consisting of cones over all elements of the decomposition $\mathscr{P}$ of $\partial\Delta$ as described in Example 3.2. Consider in $\mathbb{P}_{\nabla}\times\mathbb{A}^{1}$ the degenerating family $\mathcal{X}\rightarrow\mathbb{A}^{1}$ of Calabi-Yau manifolds given by

$$s_{0}+t\sum_{m\in\nabla\cap\mathbb{Z}^{4}}c_{m}s_{m}=0$$

where $s_{m}$ is the section of $\mathcal{O}_{\mathbb{P}_{\nabla}}(1)$ corresponding to $m\in\nabla\cap\mathbb{Z}^{4}$. Let $\widetilde{\mathcal{X}}$ be the proper transform of $\mathcal{X}$ in $X_{\Sigma}\times\mathbb{A}^{1}$. Then the family $\widetilde{\mathcal{X}}\rightarrow\mathbb{A}^{1}$ is a toric degeneration with general fibre the mirror quintic, and its dual intersection complex is the affine manifold $B$ constructed in Example 3.2.